Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs12981983 chr19:12550089 T/C 1.24E-5 111 5.62 22.83 13.1 KM Plot
LAML rs12982363 chr19:12580895 C/T 4.11E-5 109 6.13 23.3 13.1 KM Plot
LAML rs12982475 chr19:12550466 A/G 1.24E-5 111 5.62 22.83 13.1 KM Plot
LAML rs12983653 chr19:16220893 T/C 0.000133 107 16.2 8.13 0 KM Plot
LAML rs12983940 chr19:19516431 G/A 0.000128 111 16.3 9.13 0 KM Plot
LAML rs12987362 chr2:3224629 G/A 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs12998568 chr2:3214425 G/A 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs13003592 chr2:3223110 A/C 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs13010145 chr2:3223149 T/C 5.94E-5 111 0 14.7 15.2 KM Plot
LAML rs13012468 chr2:2215203 G/T 0.000111 111 0 16.23 15.17 KM Plot
LAML rs13023199 chr2:3224728 T/C 6.51E-5 109 0 14.7 15.2 KM Plot
LAML rs13023227 chr2:3224782 T/C 0.000132 106 0 13.1 15.7 KM Plot
LAML rs13028641 chr2:127423006 G/C 0.000153 111 15.23 13.1 0 KM Plot
LAML rs13063312 chr3:48661985 G/A 0.000106 111 15.73 11.68 0 KM Plot
LAML rs13117333 chr4:16039966 T/G 0.000159 109 15.2 12.65 0 KM Plot